Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015797853.1_cds_XP_016456855.1_5013
CDS Infomation

[gene=LOC107780788] [db_xref=GeneID:107780788] [protein=cyclic nucleotide-gated ion channel 1-like] [protein_id=XP_016456855.1] [location=complement(join(36323..36617,36718..37112,37195..37431,37938..38049,38144..38433,38730..38942,39037..39571,40859..40890))] [gbkey=CDS]
Sequence

ATGACGATTGTCAATCAAGAAAAATACTTAAGGTTTGAGGACTGCAAGTCAGAAGATAAT
AGGCTGTTTTCAGGCAGAAAATCATCAACCAGCTCATGGATGAGTACTATTAGAAGAGGA
TTTTCCAATAGAATAAGTAGTTTAAAAAGAAAATCGCTGCACATCCCTTCTCTAAGTGGC
AGGCCAAAAGAAGTATCTGCAGGATCATCAAGAAATAAAGTTCTTGATCCTCAGGAGCCT
TTTCTTCAATTCTGGAACAAAATATTTGTCTTGGCTTGTATAGTTTCAGTGGCCATTGAT
CCATTGTTCTTCTACATTTCTGTCGTTGATATCAAGAGGAAATGCCTTGATTTGGACCAC
TCATTAAAGATCCCTATTTCTGTTCTTCGATCAGTCACCGATCTTTTCTATATATATCAT
ATTATCTTGCAATTTCGAACTGGCTTTATTGCTCCTTCTTCTCGAGTATTTGGTAGGGGT
GAGTTGATTGAGGACTCTTCCCTTATAGCCAAGCGATACATCCCTTATTTCATCATTGAC
ATTCTAGCTGTTCTTCCACTTCCACAGCTCGTGCTCTTTATCAACGCTCCTAACGCGAAT
CGTGCCATATCTCTGGTGATGAAAAAACAGTTGGTGATTGTTGTTTTCACACAATATGTT
CCAAGAATCTTTAGGATATTTCCGTTATACAAAGAAGTAACAAGGACAACAGGTTTTTTT
ACTGAAACGGCATGGGCTGGAGCTGCTTTCAACTTATTCCTATTCATGATCGCCAGTAAT
GTAGTTGGAGCCCTGTGGTATTTGATCACAGTGGAAAGACAAGACAACTGCTGGAGCCAA
GTATGTAAGGGTTTTGAAGAATGTGTGTTAGACCACTTATGTTGCGGGCAACAAGGGAAA
AATGCTCAATTTCTTAATTCTTCTTGTCGTCTCCTGAAACCGGAAGAAATACAAGAGAAT
GACTTTGATTTTGGGATATTTCGTGATGCTCTTCAGTCTCGAGTTGTACAAAGAAGAAAC
TTCTGGTCCAAACTCAGCTATTGCTTCTGGTGGGGGCTGCGAAATTTAAGTTCTCTAGGC
CAAGGCCTTAACACAAGCGACTTTCTAGGGGAGATTCTCTTTGCGGTCTTCATCTGCATT
CTTGGGCTGATTCTGTTTTCCTTGCTTATTGGCAACATGCAGGAATATTTGCAGTCTATC
ACAGTTAGAGTAGAAGGGATGAGGTTGAGAAGGCGGGATGCAGAACAGTGGATGTCTCAC
CGCATGCTTCCTGACAACCTTAGAGAGCGCATTCGAAGATATGAGCAGTACAAATGGCAA
CAAACTAGAGGCGTTGATGAAGATTATCTAATTTGTAACCTTCCCAAAGACTTGAGGAGA
GACGTAAAGCGCCATCTCTGCTGGTCTTTGCTCAAAAGAGTACCCATGTTTGAGAAAATG
GATGAACAGTTACTGGATGCATTGTGTGATCGACTGAAACCAGCTCTTTTCACAGAGAAT
AGCTTCATAATTCGAGAAGGAGATCCAGTGAATGAGATGCTTTTTCTGATGAGAGGTACT
TTGTTGACTATAACTACCAATGGCGGAAGAACTGGCTTCTTCAACTCTGCATCTCTCACG
GCTGGTGATTTCTGTGGAGAGGAGCTTCTTACATGGGCTTTGGATCCCCATGCTTCCTCG
ACTCTTCCAGCCTCAACTAGAACAGTGCAAGCTGTTATAGATGTTGAAGCTTTTGCTCTC
ACAGCTGATGATCTCAAGTTTGTTGCCGCCCAATTTAGACACCTTCATAGTAAGCAGATT
CGGCATGCTTTTAGGTTCTATTCACAGCACTGGAGGACATGGGCAGCATGTTTTATACAA
GCAGCATGGCGCAGACACTACAGGAACAAGCTTGAGAAATCTTTGAGAGAGGAAGAAGAT
AGACTGCAGGCTGCATTGGAAAATGAGACTGCAAATATACCAAGTCTTGGGGCTACCATT
TATGCATCAAGGTTTGCTGCCAACGCATTGCGTGTCTTGCGGCGCAACCACCTAAAGGGT
TCCAAATCATCTAGCAGAGTAAGTCCCTTACTGCTTCAGAAGCCAGCTGAACCTGATTTT
AGCTCCTAA

Peptide Sequence

PEP ID

XP_016456855.1
PEP Infomation

PREDICTED: cyclic nucleotide-gated ion channel 1-like [Nicotiana tabacum]
Sequence

MTIVNQEKYLRFEDCKSEDNRLFSGRKSSTSSWMSTIRRGFSNRISSLKRKSLHIPSLSG
RPKEVSAGSSRNKVLDPQEPFLQFWNKIFVLACIVSVAIDPLFFYISVVDIKRKCLDLDH
SLKIPISVLRSVTDLFYIYHIILQFRTGFIAPSSRVFGRGELIEDSSLIAKRYIPYFIID
ILAVLPLPQLVLFINAPNANRAISLVMKKQLVIVVFTQYVPRIFRIFPLYKEVTRTTGFF
TETAWAGAAFNLFLFMIASNVVGALWYLITVERQDNCWSQVCKGFEECVLDHLCCGQQGK
NAQFLNSSCRLLKPEEIQENDFDFGIFRDALQSRVVQRRNFWSKLSYCFWWGLRNLSSLG
QGLNTSDFLGEILFAVFICILGLILFSLLIGNMQEYLQSITVRVEGMRLRRRDAEQWMSH
RMLPDNLRERIRRYEQYKWQQTRGVDEDYLICNLPKDLRRDVKRHLCWSLLKRVPMFEKM
DEQLLDALCDRLKPALFTENSFIIREGDPVNEMLFLMRGTLLTITTNGGRTGFFNSASLT
AGDFCGEELLTWALDPHASSTLPASTRTVQAVIDVEAFALTADDLKFVAAQFRHLHSKQI
RHAFRFYSQHWRTWAACFIQAAWRRHYRNKLEKSLREEEDRLQAALENETANIPSLGATI
YASRFAANALRVLRRNHLKGSKSSSRVSPLLLQKPAEPDFSS

Transcript Sequence

Gene sequence data has not been registered.